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14 items tagged with 'kinetic data'.
Models (1)
Uploader: Katharina Beuke
Contributor: Katharina Beuke, Sven Sahle, Ursula Kummer
Other contributors: Not specified
Model type: Ordinary differential equations (ODE)
Model format: SBML
Version: 3
Projects: A2.4: Linking signalling pathways regulating liver regeneration and orga..., B1.2: Reciprocal effect of cell-cell communication on information proces...
Organism: Not specified
Environment: Copasi
Scales: Cell
We created an ODE-based model of TNFalpha-induced NFkappaB signalling in primary hepatocytes.
Created: 19th Oct 2012 at 17:26 Last updated: 10th Jan 2013 at 10:18
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Download Publications (10)
Authors: K. Abshagen, M. Konig, A. Hoppe, I. Muller, M. Ebert, H. Weng, H. G. Holzhutter, U. M. Zanger, J. Bode, B. Vollmar, M. Thomas, S. Dooley
PubMed ID: 26589287
Date Published: 20th Nov 2015
Projects: A1: Cellular metabolism, A2: Integration of Signalling Pathways in Hepatocellular Response, A3: Crosslinking signalling metabolism and hepatocyte polarisation, B: Communication of Hepatocytes and Non-Parenchymal Liver Cells, C: Liver lobule level, D: Whole organ level
Journal: BMC Syst Biol
Citation: BMC Syst Biol. 2015 Nov 20;9(1):83.
Scales: Cell, Liver lobule and Liver
Abstract (Expand)
Created: 23rd Nov 2015 at 07:41
Authors: Ulrike Wittig, Renate Kania, Meik Bittkowski, Elina Wetsch, Lei Shi, Lenneke Jong, Martin Golebiewski, Maja Rey, Andreas Weidemann, Isabel Rojas, Wolfgang Müller
DOI: 10.1016/j.pisc.2014.02.004
Date Published: 1st May 2014
Projects: F3: Kinetic data handling
Journal: Perspectives in Science
Citation: Perspectives in Science 1(1-6) : 33
Scales: Not specified
Abstract (Expand)
Created: 3rd Feb 2015 at 10:55 Last updated: 3rd Feb 2015 at 11:03
Authors: Martin Golebiewski, Saqib Mir, Renate Kania, Olga Krebs, Andreas Weidemann, Ulrike Wittig, Isabel Rojas
DOI: 10.1186/1752-0509-1-S1-P4
Date Published: 2007
Scales: Not specified
Abstract:
Created: 11th Nov 2010 at 18:36 Last updated: 24th Oct 2013 at 16:23
Authors: Ulrike Wittig, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Stefanie Anstein, Jasmin Saric, Isabel Rojas
DOI: 10.1007/11799511_9
Date Published: 2006
Projects: F3: Kinetic data handling
Book: Data Integration in the Life Sciences
Citation: Lecture Notes in Computer Science 4075 : 94
Scales: Not specified
Abstract (Expand)
Created: 26th Jul 2011 at 18:33 Last updated: 24th Oct 2013 at 16:24
Authors: Isabel Rojas, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Ulrike Wittig
DOI: 10.1186/1752-0509-1-S1-S6
Date Published: 2007
Scales: Not specified
Abstract:
Created: 1st Dec 2010 at 13:43 Last updated: 24th Oct 2013 at 16:23
Authors: Isabel Rojas, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Ulrike Wittig
PubMed ID: 17822389
Date Published: 14th Sep 2007
Projects: F3: Kinetic data handling
Journal: In Silico Biol. (Gedrukt)
Citation: In Silico Biol. (Gedrukt) 7(2 Suppl): S37-44
Scales: Not specified
Abstract (Expand)
Created: 5th Nov 2010 at 15:52 Last updated: 24th Oct 2013 at 16:23
Authors: Ulrike Wittig, Renate Kania, Martin Golebiewski, Maja Rey, Lei Shi, Lenneke Jong, Enkhjargal Algaa, Andreas Weidemann, Heidrun Sauer-Danzwith, Saqib Mir, Olga Krebs, Meik Bittkowski, Elina Wetsch, Isabel Rojas, Wolfgang Müller
PubMed ID: 22102587
Date Published: 22nd Nov 2011
Projects: F3: Kinetic data handling
Journal: Nucleic acids research
Citation: Nucleic Acids Res. 40(Database issue): D790-6
Scales: Not specified
Abstract (Expand)
Created: 29th Nov 2011 at 00:56 Last updated: 24th Oct 2013 at 16:17
Authors: Neil Swainston, Martin Golebiewski, Hanan L Messiha, Naglis Malys, Renate Kania, Sylvestre Kengne, Olga Krebs, Saqib Mir, Heidrun Sauer-Danzwith, Kieran Smallbone, Andreas Weidemann, Ulrike Wittig, Douglas B Kell, Pedro Mendes, Wolfgang Müller, Norman W Paton, Isabel Rojas
PubMed ID: 20738395
Date Published: 3rd Aug 2010
Scales: Not specified
Abstract (Expand)
Created: 11th Jan 2011 at 11:11 Last updated: 24th Oct 2013 at 16:20
Authors: Ulrike Wittig, Maja Rey, Renate Kania, Meik Bittkowski, Lei Shi, Martin Golebiewski, Andreas Weidemann, Wolfgang Müller, Isabel Rojas
PubMed ID: 24165050
Date Published: 30th Oct 2013
Scales: Not specified
Abstract (Expand)
Created: 27th Nov 2013 at 13:21
Authors: Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn van Iersel, Sarah Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère
Date Published: 2013
Projects: A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes
Journal: BMC Syst Biol
Citation: BMC Syst Biol 7(1) : 116
Scales: Cell and Intercellular
Abstract (Expand)
Created: 4th Nov 2013 at 16:48 Last updated: 4th Nov 2013 at 16:54
Presentations (3)
Uploader: Martin Golebiewski
Contributor: Andreas Weidemann, Elina Wetsch, Lei Shi, Maja Rey, Martin Golebiewski, Ulrike Wittig, Wolfgang Müller
Other contributors: Enkhjargal Algaa, Meik Bittkowski, Lenneke Jong, Renate Kania, Isabel Rojas
Version: 1
Projects: F3: Kinetic data handling
Scales: Not specified
Created: 10th Oct 2012 at 16:56
Uploader: Martin Golebiewski
Contributor: Martin Golebiewski
Other contributors: Not specified
Version: 1
Projects: F3: Kinetic data handling
Scales: Not specified
Talk at the COMBINE 2012 meeting
Created: 9th Oct 2012 at 10:35
Uploader: Martin Golebiewski
Contributor: Andreas Weidemann, Elina Wetsch, Jonathan Fuller, Maja Rey, Martin Golebiewski, Michael Martinez, Rebecca Wade, Ulrike Wittig, Wolfgang Müller
Other contributors: Enkhjargal Algaa, Meik Bittkowski, Lenneke Jong, Renate Kania, Lei Shi, Stefan Henrich, Isabel Rojas
Version: 1
Projects: F3: Kinetic data handling, Virtual Liver
Scales: Cell
SABIO-RK is a curated database for biochemical reaction kinetics data. The system offers standardized data manually extracted from the literature or directly submitted from lab experiments. The captured data is standardized by the use of controlled vocabularies and annotations pointing to other resources and biological ontologies.
Created: 9th Jul 2012 at 14:28 Last updated: 16th Jul 2012 at 14:43
