Virtual Liver SEEK

3 items tagged with 'Software'.

Publications (3)

RPPApipe: A pipeline for the analysis of reverse-phase protein array data

Authors: Johannes Eichner, Yvonne Heubach, Manuel Ruff, Hella Kohlhof, Stefan Strobl, Barbara Mayer, Michael Pawlak, Markus F. Templin, Andreas Zell

DOI: 10.1016/j.biosystems.2014.06.009

Date Published: 1st Aug 2014

Projects: A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes

Journal: Biosystems

Citation: Biosystems 122 : 19

Scales: Cell and Intercellular

Abstract (Expand)

Background and scope: Today, web-based data analysis pipelines exist for a wide variety of microarray platforms, such as ordinary gene-centered arrays, exon arrays and SNP arrays. However, most of the ...

Created: 17th Nov 2015 at 12:14 Last updated: 17th Nov 2015 at 12:15

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Authors: N. Rodriguez, A. Thomas, L. Watanabe, I. Y. Vazirabad, V. Kofia, H. F. Gomez, F. Mittag, J. Matthes, J. Rudolph, F. Wrzodek, E. Netz, A. Diamantikos, J. Eichner, R. Keller, C. Wrzodek, S. Frohlich, N. E. Lewis, C. J. Myers, N. Le Novere, B. O. Palsson, M. Hucka, A. Drager

PubMed ID: 26079347

Date Published: 17th Jun 2015

Projects: A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes

Journal: Bioinformatics

Citation: Bioinformatics :

Scales: Cell, Intercellular, Liver lobule, Liver and Organism

Abstract (Expand)

JSBML, the official pure Java programming library for the SBML format, has evolved with the advent of different modeling formalisms in systems biology and their ability to be exchanged and represented ...

Created: 22nd Jun 2015 at 17:56

Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology

Authors: J. Starruss, W. d. Back, L. Brusch, A. Deutsch

DOI: 10.1093/bioinformatics/btt772

Date Published: 17th Jan 2014

Projects: A3.3: Hepatocyte polarity, A3: Crosslinking signalling metabolism and hepatocyte polarisation, B2.3: Effect of hepatic stellate cells on hepatocyte polarity and transd..., B3: Intercellular communication through cell adhesion, B: Communication of Hepatocytes and Non-Parenchymal Liver Cells, C2: Organization of the sinusoidal system and the liver lobule - referen..., C5: Structural changes and functional consequences of the liver lobular/..., C6: Organization and function of the sinusoidal system and the liver lob..., E2: Integration on the liver lobule scale: Image processing and mathemat..., E3: Horizontal integration on organ scale, E: Model integration, Showcase LIAM (Liver Image Analysis Based Model), Virtual Liver

Journal: Bioinformatics

Citation: Bioinformatics

Scales: Cell, Intercellular and Liver lobule

Abstract (Expand)

Summary: Morpheus is a modeling environment for the simulation and integration of cell-based models with ordinary differential equations and reaction-diffusion systems. It allows rapid development of ...

Created: 20th Jan 2014 at 15:49 Last updated: 20th Jan 2014 at 16:16