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8 items tagged with 'SBML'.
Models (1)
Uploader: Katharina Beuke
Contributor: Katharina Beuke, Sven Sahle, Ursula Kummer
Other contributors: Not specified
Model type: Ordinary differential equations (ODE)
Model format: SBML
Version: 3
Projects: A2.4: Linking signalling pathways regulating liver regeneration and orga..., B1.2: Reciprocal effect of cell-cell communication on information proces...
Organism: Not specified
Environment: Copasi
Scales: Cell
We created an ODE-based model of TNFalpha-induced NFkappaB signalling in primary hepatocytes.
Created: 19th Oct 2012 at 17:26 Last updated: 10th Jan 2013 at 10:18
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Download Publications (7)
Authors: Dagmar Waltemath, Frank T. Bergmann, Claudine Chaouiya, Tobias Czauderna, Padraig Gleeson, Carole Goble, Martin Golebiewski, Michael Hucka, Nick Juty, Olga Krebs, Nicolas Le Novère, Huaiyu Mi, Ion I. Moraru, Chris J. Myers, David Nickerson, Brett G. Olivier, Nicolas Rodriguez, Falk Schreiber, Lucian Smith, Fengkai Zhang, Eric Bonnet
DOI: 10.4056/sigs.5279417
Date Published: 15th Mar 2014
Projects: F1: The data management system
Journal: Stand. Genomic Sci.
Citation: Stand. Genomic Sci. 9(3) : 1285
Scales: Not specified
Abstract (Expand)
Created: 3rd Feb 2015 at 11:07 Last updated: 3rd Feb 2015 at 11:12
Authors: Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, Michael Hucka
PubMed ID: 21697129
Date Published: 24th Jun 2011
Projects: A3.4: Linking signalling to metabolic functions
Journal: Bioinformatics
Citation: Bioinformatics 27(15): 2167-8
Scales: Not specified
Abstract (Expand)
Created: 24th Jun 2011 at 10:36 Last updated: 24th Oct 2013 at 16:18
Authors: Claudine Chaouiya, Duncan Berenguier, Sarah M Keating, Aurelien Naldi, Martijn P van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan Kowal, Benjamin Wicks, Emanuel Gonçalves, Julien Dorier, Michel Page, Pedro T Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomá¿ Helikar
Date Published: 2013
Projects: A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes
Journal: BMC Syst Biol
Citation: BMC Syst Biol 7(1) : 135
Scales: Cell and Intercellular
Abstract (Expand)
Created: 10th Dec 2013 at 18:07 Last updated: 10th Dec 2013 at 18:09
Authors: Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J Ziller, Richard Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell, Andreas Dräger
Date Published: 2013
Projects: A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes
Journal: BMC Syst Biol
Citation: BMC Syst Biol 7(1) : 55
Scales: Cell, Intercellular, Liver lobule, Liver and Organism
Abstract (Expand)
Created: 9th Jul 2013 at 04:12 Last updated: 24th Oct 2013 at 16:15
Authors: Clemens Wrzodek, Finja Büchel, Manuel Ruff, Andreas Dräger, Andreas Zell
Date Published: 2013
Projects: A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes
Journal: BMC Syst Biol
Citation: BMC Syst Biol 7(1) : 15
Scales: Cell and Intercellular
Abstract (Expand)
Created: 23rd Feb 2013 at 23:19 Last updated: 24th Oct 2013 at 16:15
Authors: F. Buchel, C. Wrzodek, F. Mittag, A. Drager, J. Eichner, N. Rodriguez, N. L. Novere, A. Zell
DOI: 10.1093/bioinformatics/bts508
Date Published: 24th Aug 2012
Projects: A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes, Showcase Steatosis
Journal: Bioinformatics
Citation: Bioinformatics 28(20) : 2648
Scales: Cell and Intercellular
Abstract (Expand)
Created: 25th Aug 2012 at 21:46 Last updated: 24th Oct 2013 at 16:16
Authors: Matthias König, Andreas Dräger, Hermann-Georg Holzhütter
PubMed ID: 22772946
Date Published: 10th Jul 2012
Projects: A1: Cellular metabolism, A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes, F: Data management
Journal: Bioinformatics (Oxford, England)
Citation: Bioinformatics 28(18): 2402-3
Scales: Not specified
Abstract (Expand)
Created: 12th Jul 2012 at 08:37 Last updated: 24th Oct 2013 at 16:16
