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CySBML: a Cytoscape plugin for SBML

Abstract:

SUMMARY: CySBML is a plugin designed to work with SBML in Cytoscape having the following features: SBML import, support of the SBML Layout and Qualitative Model packages, navigation in network layouts based on SBML structure, access to MIRIAM and SBO-based annotations, and SBML validation. CySBML includes an importer for BioModels to load SBML from standard repositories.Availability and implementation: Freely available for noncommercial purposes via the Cytoscape plugin manager or for download at http://sourceforge.net/projects/cysbml/. CONTACT: cysbml-team@lists.sourceforge.net SUPPLEMENTARY INFORMATION: Tutorial, usage guide, installation instructions and additional figures are available for download at http://www.charite.de/sysbio/people/koenig/software/cysbml/.

22772946

Projects: A1: Cellular metabolism, A3.4: Linking signalling to metabolic functions, B5: Cell-cell communication influences detoxifying functions in hepatocytes, F: Data management

Bioinformatics (Oxford, England)
Bioinformatics 28(18): 2402-3
10th Jul 2012

Matthias König, Andreas Dräger, Hermann-Georg Holzhütter

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[Matthias König] [Andreas Dräger] [Hermann-Georg Holzhütter]

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Views: 2385
  • Created: 12th Jul 2012 at 08:37
  • Last updated: 24th Oct 2013 at 16:16

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