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Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology

Abstract:

Summary: Morpheus is a modeling environment for the simulation and integration of cell-based models with ordinary differential equations and reaction-diffusion systems. It allows rapid development of multiscale models in biological terms and mathematical expressions rather than programming code. Its graphical user interface supports the entire workflow from model construction and simulation to visualization, archiving and batch processing.

Availability: Binary packages are available for Linux, Mac OSX and MS Windows at http://imc.zih.tu-dresden.de/wiki/morpheus.

Contact: walter.deback@tu-dresden.de

Supplementary Information: The user manual is available at Bioinformatics online and on the Morpheus website: http://imc.zih.tu-dresden.de/wiki/morpheus.

10.1093/bioinformatics/btt772

Projects: A3.3: Hepatocyte polarity, A3: Crosslinking signalling metabolism and hepatocyte polarisation, B2.3: Effect of hepatic stellate cells on hepatocyte polarity and transd..., B3: Intercellular communication through cell adhesion, B: Communication of Hepatocytes and Non-Parenchymal Liver Cells, C2: Organization of the sinusoidal system and the liver lobule - referen..., C5: Structural changes and functional consequences of the liver lobular/..., C6: Organization and function of the sinusoidal system and the liver lob..., E2: Integration on the liver lobule scale: Image processing and mathemat..., E3: Horizontal integration on organ scale, E: Model integration, Showcase LIAM (Liver Image Analysis Based Model), Virtual Liver

Bioinformatics
Bioinformatics
17th Jan 2014

J. Starruss, W. d. Back, L. Brusch, A. Deutsch

help Authors

[Walter De Back] [Lutz Brusch] [Andreas Deutsch] [Jörn Starruß]

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None

Views: 1805
  • Created: 20th Jan 2014 at 15:49
  • Last updated: 20th Jan 2014 at 16:16

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