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ICSB Tutorial: Modelling and Simulation of Quantitative Biological Models

Participants of this full-day COMBINE (http://co.mbine.org/) tutorial workshop will learn setting-up quantitative computer models of biological networks using experimental kinetic data and simulating them in different systems biology platforms. Hands-on sessions, lectures and software demonstrations will be included providing attendees with the necessary skills to enable them to access experimental kinetics data from available resources, assembling computer models with these data and finally simulating the models within different tools.

The topics will include:
* Using experimental data for setting up quantitative models
* Parameter estimation, optimization and model fitting
* Simulation, analysis and visualization of biochemical models
* Integrated data management and model databases
* Community standards and formats for systems biology models

Covered tools, platforms, databases and standards:

BioModels database: http://www.ebi.ac.uk/biomodels-main/
CellDesigner: http://www.celldesigner.org/
COMBINE: http://co.mbine.org/
COPASI: http://www.copasi.org
JWS Online/OneStop: http://jjj.biochem.sun.ac.za/
SABIO-RK: http://sabio.h-its.org/
SBML: http://sbml.org
SYCAMORE: http://sycamore.eml.org
SysMO-DB: http://www.sysmo-db.org/
Virtual Cell (VCell): http://www.nrcam.uchc.edu/
Virtual Liver SEEK: http://seek.virtual-liver.de/

Target audience:
Modellers and experimentalists with some basic experience in modelling and simulation of biological networks.

Tutors:
Martin Golebiewski, Frank Bergmann, Akira Funahashi, Noriko Hiroi, Mike Hucka, Nicolas Le Novère, Pedro Mendes, Ion Moraru, Sven Sahle, Jacky Snoep, Dawie van Niekerk, Andreas Weidemann, Katy Wolstencroft

This workshop is a satellite of the 14th International Conference on Systems Biology (ICSB). You can sign in for the tutorial (free of charge) when registering for the conference at http://www.icsb2013.dk.

Projects: Virtual Liver

Martin Golebiewski

4th Sep 2013 at 11:30

4th Sep 2013 at 19:30

http://www.co.mbine.org/events/ICSB_2013

Technical University of Denmark

Copenhagen

 DkDenmark

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