Models

 

Kformula Testmodel Cytoscape


Uploader: Martin Golebiewski

Contributor: Jonathan Fuller, Martin Golebiewski

Other contributors: Not specified

Model type: Graphical model

Model format: XGMML

Version: 2

Projects: F1: The data management system

Organism: Not specified

Environment: Cytoscape Web

Scales: Cell

This is just a test model for visualization in Cytoscape

Created: 22nd May 2012 at 16:01   Last updated: 1st Oct 2012 at 15:51


 

Kformula TGFbeta Signalling Feedback Loops


Uploader: Martin Golebiewski

Contributor: Anastasia Bachmann, Christoph Meyer, Philippe Lucarelli, Steven Dooley, Sven Sahle, Ursula Klingmüller, Ursula Kummer

Other contributors: Katja Wegner, Jan-Ulrich Schad, Peter Nickel

Model type: Ordinary differential equations (ODE)

Model format: SBML

Version: 1

Projects: Virtual Liver

Organism: Mus musculus

Environment: Copasi

Scales: Cell

Transforming growth factor β (TGF-β) ligands activate a signaling cascade with multiple cell context dependent outcomes. Disruption or disturbance leads to variant clinical disorders. To develop strategies for disease intervention, delineation of the pathway in further detail is required. Current theoretical models of this pathway describe production and degradation of signal mediating proteins and signal transduction from the cell surface into the nucleus, whereas feedback loops have not
...

Created: 5th Feb 2013 at 18:28   Last updated: 5th Feb 2013 at 18:33


 

Kformula The JSBML project


Uploader: Andreas Dräger

Contributor: Andreas Dräger

Other contributors: Not specified

Model type: Not specified

Model format: SBML

Scales: Cell, Intercellular, Liver lobule, Liver and Organism

JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.

Created: 23rd Jun 2015 at 21:05



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